Tree stem bases are sources of CH₄ and N₂O in a tropical forest on upland soil during the dry to wet season transition

Tropical forests on upland soils are assumed to be a methane (CH4) sink and a weak source of nitrous oxide (N2O), but studies of wetland forests have demonstrated that tree stems can be a substantial source of CH4,and recent evidence from temperate woodlands suggests that tree stems can also emit N2O. Here, we measured CH4 and N2O fluxes from the soil and from tree stems in a semi-evergreen tropical forest on upland soil. To examine the influence of seasonality, soil abiotic conditions, and substrate availability (litter inputs) on trace greenhouse gas (GHG) fluxes, we conducted our study during the transition from the dry to the wet season in a long-term litter manipulation experiment in Panama, Central America. Trace GHG fluxes were measured from individual stem bases of two common tree species and from soils beneath the same trees. Soil CH4 fluxes varied from uptake in the dry season to minor emissions in the wet season. Soil N2O fluxes were negligible during the dry season but increased markedly after the start of the wet season. By contrast, tree stembases emitted CH4 and N2O throughout the study. Although we observed no clear effect of litter manipulation on trace GHG fluxes, tree species and litter treatments interacted to influence CH4 fluxes from stems and N2O fluxes from stems and soil, indicating complex relationships between tree species traits and decomposition processes that can influence trace GHG dynamics. Collectively, our results show that tropical trees can act as conduits for trace GHGs that most likely originate from deeper soil horizons, even when they are growing on upland soils. Coupled with the finding that the soils may be a weaker sink for CH4 than previously thought, our research highlights the need to reappraise trace gas budgets in tropical forests

Links between soil microbial communities and plant traits in a species-rich grassland under long-term climate change

Climate change can influence soil microorganisms directly by altering their growth and activity but also indirectly via effects on the vegetation, which modifies the availability of resources. Direct impacts of climate change on soil microorganisms can occur rapidly, whereas indirect effects mediated by shifts in plant community composition are not immediately apparent and likely to increase over time. We used molecular fingerprinting of bacterial and fungal communities in the soil to investigate the effects of 17 years of temperature and rainfall manipulations in a species‐rich grassland near Buxton, UK. We compared shifts in microbial community structure to changes in plant species composition and key plant traits across 78 microsites within plots subjected to winter heating, rainfall supplementation, or summer drought. We observed marked shifts in soil fungal and bacterial community structure in response to chronic summer drought. Importantly, although dominant microbial taxa were largely unaffected by drought, there were substantial changes in the abundances of subordinate fungal and bacterial taxa. In contrast to short‐term studies that report high resistance of soil fungi to drought, we observed substantial losses of fungal taxa in the summer drought treatments. There was moderate concordance between soil microbial communities and plant species composition within microsites. Vector fitting of community‐weighted mean plant traits to ordinations of soil bacterial and fungal communities showed that shifts in soil microbial community structure were related to plant traits representing the quality of resources available to soil microorganisms: the construction cost of leaf material, foliar carbon‐to‐nitrogen ratios, and leaf dry matter content. Thus, our study provides evidence that climate change could affect soil microbial communities indirectly via changes in plant inputs and highlights the importance of considering long‐term climate change effects, especially in nutrient‐poor systems with slow‐growing vegetation

The Automated Root Exudate System (ARES): a method to apply solutes at regular intervals to soils in the field.

Root exudation is a key component of nutrient and carbon dynamics in terrestrial ecosystems. Exudation rates vary widely by plant species and environmental conditions, but our understanding of how root exudates affect soil functioning is incomplete, in part because there are few viable methods to manipulate root exudates in situ. To address this, we devised the Automated Root Exudate System (ARES), which simulates increased root exudation by applying small amounts of labile solutes at regular intervals in the field. The ARES is a gravity-fed drip irrigation system comprising a reservoir bottle connected via a timer to a micro-hose irrigation grid covering c. 1 m2; 24 drip-tips are inserted into the soil to 4-cm depth to apply solutions into the rooting zone. We installed two ARES subplots within existing litter removal and control plots in a temperate deciduous woodland. We applied either an artificial root exudate solution (RE) or a procedural control solution (CP) to each subplot for 1 min day-1 during two growing seasons. To investigate the influence of root exudation on soil carbon dynamics, we measured soil respiration monthly and soil microbial biomass at the end of each growing season. The ARES applied the solutions at a rate of c. 2 L m-2 week-1 without significantly increasing soil water content. The application of RE solution had a clear effect on soil carbon dynamics, but the response varied by litter treatment. Across two growing seasons, soil respiration was 25% higher in RE compared to CP subplots in the litter removal treatment, but not in the control plots. By contrast, we observed a significant increase in microbial biomass carbon (33%) and nitrogen (26%) in RE subplots in the control litter treatment. The ARES is an effective, low-cost method to apply experimental solutions directly into the rooting zone in the field. The installation of the systems entails minimal disturbance to the soil and little maintenance is required. Although we used ARES to apply root exudate solution, the method can be used to apply many other treatments involving solute inputs at regular intervals in a wide range of ecosystems

Chemical and biological responses of marl lakes to eutrophication

Eutrophication remains one of the foremost environmental issues threatening the quality of surface waters yet comparatively little is known of the timing, magnitude and characteristics of nutrient-related changes in highly calcareous (marl) lakes.  This review focuses on marl lake ecology and chemistry, their known responses to eutrophication, and also highlights questions that remain unanswered.                                 In good condition, marl lakes support a diversity of macrophytes, especially Characeae and Potamogetonaceae, which can grow to considerable depth.  High water transparency and low phosphorus and phytoplankton concentrations are facilitated by the coprecipitation of marl and phosphorus.  Although large amounts of phosphorus can be thus removed, buffering against eutrophication, macrophyte communities can undergo significant change under rather low nutrient concentrations.  Maximum colonisation depth declines and tolerant species replace sensitive species, with losses particularly among charophytes.  Marl lakes are therefore ecologically highly sensitive.             The effects of coprecipitation on long-term burial of phosphorus are contested.  Several palaeolimnological studies have identified iron complexes as more important than calcite, as chemical conditions in the sediment may promote either calcite dissolution or calcite-bound phosphorus exchange, or possibly both.  Some marl lakes have been shown to have phosphorus concentrations which, compared with other lake types, are higher than expected in winter and lower in summer.  The phosphorus binding capacity of marl sediment has not to our knowledge been adequately researched.             Marl precipitation may be inhibited by high phosphate or organic matter concentrations in the water, or when biological communities effecting precipitation (picoplankton, charophytes, epiphytes) are disturbed.  Highly impacted marl lakes having low species diversity and lacking precipitation may be misidentified as eutrophic, high-alkalinity lakes.  More studies addressing the interaction between external loading, phosphorus cycling and marl precipitation in relation to biological communities are required to assess to what extent marl lakes can buffer eutrophication, and what factors contribute to disturbed marl precipitation.&nbsp

Carbon allocation to root exudates is maintained in mature temperate tree species under drought

- Carbon (C) exuded via roots is proposed to increase under drought and facilitate important ecosystem functions. However, it is unknown how exudate quantities relate to the total C budget of a drought-stressed tree, that is, how much of net-C assimilation is allocated to exudation at the tree level. - We calculated the proportion of daily C assimilation allocated to root exudation during early summer by collecting root exudates from mature Fagus sylvatica and Picea abies exposed to experimental drought, and combining above- and belowground C fluxes with leaf, stem and fine-root surface area. - Exudation from individual roots increased exponentially with decreasing soil moisture, with the highest increase at the wilting point. Despite c. 50% reduced C assimilation under drought, exudation from fine-root systems was maintained and trees exuded 1.0% (F. sylvatica) to 2.5% (P. abies) of net C into the rhizosphere, increasing the proportion of C allocation to exudates two- to three-fold. Water-limited P. abies released two-thirds of its exudate C into the surface soil, whereas in droughted F. sylvatica it was only one-third. - Across the entire root system, droughted trees maintained exudation similar to controls, suggesting drought-imposed belowground C investment, which could be beneficial for ecosystem resilience

Drying and rewetting conditions differentially affect the mineralization of fresh plant litter and extant soil organic matter

Drought is becoming more common globally and has the potential to alter patterns of soil carbon (C) storage in terrestrial ecosystems. After an extended dry period, a pulse of soil CO2 release is commonly observed upon rewetting (the so-called ‘Birch effect’), the magnitude of which depends on soil rewetting frequency. But the source and implications of this CO2 efflux are unclear. We used a mesocosm field experiment to subject agricultural topsoil to two distinct drying and rewetting frequencies, measuring Birch effects (as 3-day cumulative CO2 efflux upon rewetting) and the overall CO2 efflux over the entire drying-rewetting cycle. We used 14C-labelled wheat straw to determine the contribution of fresh (recently incorporated) plant litter or extant soil organic matter (SOM) to these fluxes, and assessed the extent to which the amount of soil microbial biomass + K2SO4-extractable organic C (fumigated-extracted C, FEC) before rewetting determined the magnitude of Birch effect CO2 pulses. Our results showed a gradual increase in SOM-derived organic solutes within the FEC fraction, and a decrease in soil microbial biomass, under more extreme drying and rewetting conditions. But, contrary to our hypothesis, pre-wetting levels of FEC were not related to the magnitude of the Birch effects. In the longer term, rewetting frequency and temperature influenced the overall (31-day cumulative) amount of CO2–C released from SOM upon rewetting, but the overall 14CO2–C respired from fresh straw was only influenced by the rewetting frequency, with no effect of seasonal temperature differences of ∼15 °C. We conclude that the mineralization of fresh plant litter in soils is more sensitive to water limitations than extant SOM in soils under drying-rewetting conditions. Moreover, we found little evidence to support the hypothesis that the availability of microbial and soluble organic C before rewetting determined the magnitude of the Birch effects, and suggest that future work should investigate whether these short-term CO2 pulses are predominantly derived from substrate-supply mechanisms resulting from the disruption of the soil organo-mineral matrix

Litter inputs, but not litter diversity, maintain soil processes in degraded tropical forests — a cross-continental comparison

Land-use change in tropical forests can reduce biodiversity and ecosystem carbon (C) storage, but although changes in aboveground biomass C in human-modified tropical forests are well-documented, patterns in the dynamics and storage of C belowground are less well characterised. To address this, we used a reciprocal litter transplant experiment to assess litter decomposition and soil respiration under distinct litter types in forested or converted habitats in Panama, Central America, and in Sabah, Malaysian Borneo. The converted habitats comprised a large clearing on the Panama Canal and oil palm plantation in Borneo; forested habitats comprised a 60-year old secondary forest in Panama and a disturbed forest in Borneo that was selectively logged until 2008. In each habitat, we installed mesocosms and litterbags with litter collected from old-growth forest, secondary forest or an introduced species: Elaeis guineensis in Borneo and Saccharum spontaneum in Panama. We measured litter mass loss, soil respiration, and soil microbial biomass during nine months at each site. Decomposition differed markedly between habitat types and between forest vs. introduced litter, but the decay rates and properties of old-growth and secondary forest litters in the forest habitats were remarkably similar, even across continents. Slower decomposition of all litter types in the converted habitats was largely explained by microclimate, but the faster decay of introduced litter was linked to lower lignin content compared to the forest litter. Despite marked differences in litter properties and decomposition, there was no effect of litter type on soil respiration or microbial biomass. However, regardless of location, litter type, and differences in soil characteristics, we measured a similar decline in microbial activity and biomass in the absence of litter inputs. Interestingly, whereas microbial biomass and soil respiration increased substantially in response to litter inputs in the forested habitats and the converted habitat in Panama, there was little or no corresponding increase in the converted habitat in Borneo, indicating that soil recovery capacity had declined substantially in oil palm plantations. Overall, our results suggest that litter inputs are essential to preserve key soil processes, but litter diversity may be less important, especially in highly disturbed habitats

Contributions and future priorities for soil science: comparing perspectives from scientists and stakeholders

Soils are a fundamental natural resource but intensifying demands and increasing soil degradation necessitate focussed research into the sustainable use of soils. Since soil functioning is critical for the operations and performance of multiple industries, businesses and municipalities, soil scientists need to actively engage with these bodies to orientate research goals towards stakeholder needs. To achieve this, stakeholder views about the current and potential contributions of soil science to different sectors need to be taken into account when setting the future research agenda. Here, we assessed whether the current and future research priorities of soil science match the needs of four major industrial and environmental sectors: agriculture, ecosystem services and natural resources, waste management, and water management. We used an online questionnaire, distributed to 192 organisations and via social media, to compare stakeholders' and scientists' perceptions of (a) the contributions of soil science to date, (b) the areas not currently served by soil science and (c) future research needs in soil science. Stakeholders generally rated the contributions of soil science to date as ‘great’ or ‘fundamental’, but scientists rated the contributions more highly. Respondents identified numerous areas that soil research has not yet sufficiently addressed, which were mostly sector-specific and often overlapped with perceived future research needs. Importantly, stakeholders' and scientists' views of future research priorities differed strongly within sectors, with the notable exception of agriculture, where views were generally consistent. We conclude that soil science may hold unexplored potential in several industrial and environmental sectors. We call for improved research communication and greater stakeholder involvement to shape the future soils research agenda and ensure the sustainable use of soils across multiple areas of society

Increased Litterfall in Tropical Forests Boosts the Transfer of Soil CO2 to the Atmosphere

Aboveground litter production in forests is likely to increase as a consequence of elevated atmospheric carbon dioxide (CO2) concentrations, rising temperatures, and shifting rainfall patterns. As litterfall represents a major flux of carbon from vegetation to soil, changes in litter inputs are likely to have wide-reaching consequences for soil carbon dynamics. Such disturbances to the carbon balance may be particularly important in the tropics because tropical forests store almost 30% of the global soil carbon, making them a critical component of the global carbon cycle; nevertheless, the effects of increasing aboveground litter production on belowground carbon dynamics are poorly understood. We used long-term, large-scale monthly litter removal and addition treatments in a lowland tropical forest to assess the consequences of increased litterfall on belowground CO2 production. Over the second to the fifth year of treatments, litter addition increased soil respiration more than litter removal decreased it; soil respiration was on average 20% lower in the litter removal and 43% higher in the litter addition treatment compared to the controls but litter addition did not change microbial biomass. We predicted a 9% increase in soil respiration in the litter addition plots, based on the 20% decrease in the litter removal plots and an 11% reduction due to lower fine root biomass in the litter addition plots. The 43% measured increase in soil respiration was therefore 34% higher than predicted and it is possible that this ‘extra’ CO2 was a result of priming effects, i.e. stimulation of the decomposition of older soil organic matter by the addition of fresh organic matter. Our results show that increases in aboveground litter production as a result of global change have the potential to cause considerable losses of soil carbon to the atmosphere in tropical forests

Deepened winter snow cover enhances net ecosystem exchange and stabilizes plant community composition and productivity in a temperate grassland

Global warming has greatly altered winter snowfall patterns, and there is a trend towards increasing winter snow in semi-arid regions in China. Winter snowfall is an important source of water during early spring in these water-limited ecosystems, and it can also affect nutrient supply. However, we know little about how changes in winter snowfall will affect ecosystem productivity and plant community structure during the growing season. Here, we conducted a 5-year winter snow manipulation experiment in a temperate grassland in Inner Mongolia. We measured ecosystem carbon flux from 2014 to 2018 and plant biomass and species composition from 2015 to 2018. We found that soil moisture increased under deepened winter snow in early growing season, particularly in deeper soil layers. Deepened snow increased the net ecosystem exchange of CO 2 (NEE) and reduced intra- and inter-annual variation in NEE. Deepened snow did not affect aboveground plant biomass (AGB) but significantly increased root biomass. This suggested that the enhanced NEE was allocated to the belowground, which improved water acquisition and thus contributed to greater stability in NEE in deep-snow plots. Interestingly, the AGB of grasses in the control plots declined over time, resulting in a shift towards a forb-dominated system. Similar declines in grass AGB were also observed at three other locations in the region over the same time frame and are attributed to 4 years of below-average precipitation during the growing season. By contrast, grass AGB was stabilized under deepened winter snow and plant community composition remained unchanged. Hence, our study demonstrates that increased winter snowfall may stabilize arid grassland systems by reducing resource competition, promoting coexistence between plant functional groups, which ultimately mitigates the impacts of chronic drought during the growing season